- TCP Connections for P2P Apps: A Software Approach to Solving the NAT Problem. by Jeffrey L. Eppinger. Technical Report CMU-ISRI-05-104, Carnegie Mellon Institute for Software Research, 2005.
- Camelot and Avalon: A Transaction Processing Facility by Jeffrey L. Eppinger, Lily B. Mummert, and Alfred Z. Spector (editors). Morgan Kaufmann, 1991.
- The Duality of Memory and Communication in the Implementation of a Multiprocessor Operating System by Michael Young, Avadis Tevanian, Jr., Richard Rashid, David Golub, Jeffrey Eppinger, Jonathan Chew, William Bolosky, David Black, and Robert Baron. In Proceedings of the Eleventh Symposium on Operating System Principles, pages 63-76, ACM, November, 1987.
- An Empirical Study of Insertion and Deletion in Binary Search Trees by Jeffrey L. Eppinger. In Communications of the ACM, pages 663-669, September, 1983. (Won the George E. Forsythe Award for Best Undergraduate Research Paper.)